@article{kabus2022numerical,
  author={Desmond {Kabus} and Louise {Arno} and Lore {Leenknegt} and Alexander V. {Panfilov} and Hans {Dierckx}},
  doi={10.1371/journal.pone.0271351},
  journal={PLOS ONE},
  publisher={Public Library of Science},
  title={Numerical methods for the detection of phase defect structures in excitable media},
  year={2022},
  month={07},
  volume={17},
  pages={1-31},
  number={7}
}

@article{cloet2023scroll,
  author={Marie {Cloet} and Louise {Arno} and Desmond {Kabus} and Joeri {Van der Veken} and Alexander V {Panfilov} and Hans {Dierckx}},
  doi={10.1103/PhysRevLett.131.208401},
  title={Scroll waves and filaments in excitable media of higher spatial dimension},
  journal={Physical Review Letters},
  volume={131},
  number={20},
  pages={208401},
  year={2023},
  publisher={APS}
}

@article{kabus2024fast,
  author={Desmond {Kabus} and Tim {De Coster} and Antoine A. F. {de Vries} and Dani{\"e}l A. {Pijnappels} and Hans {Dierckx}},
  title={Fast creation of data-driven low-order predictive cardiac tissue excitation models from recorded activation patterns},
  doi={10.1016/j.compbiomed.2024.107949},
  journal={Computers in Biology and Medicine},
  volume={169},
  pages={107949},
  year={2024},
  issn={0010-4825},
}

@article{kabus2024ithildin,
  doi={10.1371/journal.pone.0303674},
  author={Desmond {Kabus} and Marie {Cloet} and Christian {Zemlin} and Olivier {Bernus} and Hans {Dierckx}},
  journal={PLOS ONE},
  publisher={Public Library of Science},
  title={The {Ithildin} library for efficient numerical solution of anisotropic reaction-diffusion problems in excitable media},
  year={2024},
  month={09},
  volume={19},
  pages={1-26},
  number={9},
}

@article{legat2024imaging,
  doi={10.1126/sciadv.adp2384},
  author={Thibaut {Legat} and Vladimir {Grachev} and Desmond {Kabus} and Minne Paul {Lettinga} and Koen {Clays} and Thierry {Verbiest} and Yovan {de Coene} and Wim {Thielemans} and Stijn {Van Cleuvenbergen}},
  title={Imaging with a twist: Three-dimensional insights of the chiral nematic phase of cellulose nanocrystals via SHG microscopy},
  journal={Science Advances},
  volume={10},
  number={44},
  pages={eadp2384},
  year={2024}
}

@article{arno2024feynman,
  doi={10.1038/s41598-024-73544-z},
  title={Analysis of complex excitation patterns using {Feynman-like} diagrams},
  author={Louise {Arno} and Desmond {Kabus} and Hans {Dierckx}},
  journal={Scientific Reports},
  volume={14},
  number={1},
  pages={28962},
  year={2024},
  publisher={Nature Publishing Group UK London}
}

@article{arno2025strings,
  doi={10.1103/5pgp-1wj6},
  title={Strings, Branes and Twistons: Topological Analysis of Phase Defects in Excitable Media Such as the Heart},
  author={Arno, Louise and Kabus, Desmond and Dierckx, Hans},
  journal={Physical Review Letters},
  volume={135},
  number={12},
  pages={128402},
  year={2025},
  publisher={APS}
}

@article{gobeyn2025zeus,
  doi={10.1063/5.0288713},
  title={{ZEUS}: Numerical methods to detect quasi-particles describing excitable media},
  author={Gobeyn, Aaron and Kabus, Desmond and Tolkacheva, Elena G. and Dierckx, Hans},
  journal={Chaos: An Interdisciplinary Journal of Nonlinear Science},
  volume={35},
  number={12},
  pages={123105},
  year={2025},
  month={12},
  publisher={AIP Publishing}
}

@article{kabus2026pigreads,
  doi={10.1016/j.cpc.2026.110088},
  author={Desmond {Kabus} and Hans {Dierckx} and Tim {De Coster}},
  title={{Pigreads}: The {Python}-integrated {GPU}-enabled reaction-diffusion solver using {OpenCL} for cardiac electrophysiology and other applications},
  journal={Computer Physics Communications},
  pages={110088},
  year={2026},
  issn={0010-4655}
}

@article{decoster2026ionic,
  author={Tim {De Coster} and Desmond {Kabus}  and Arie O. {Verkerk} and Marieke W. {Veldkamp} and Niels {Harlaar} and Sven O. {Dekker} and Antoine A. F. de {Vries} and Daniël A. {Pijnappels} and Alexander V. {Panfilov}},
  title={Ionic mechanisms underlying human immortalised atrial action potential properties: insights from a mathematical model},
  year={2026},
  note={In preparation},
}

@article{kamphuis2026microscopic,
  author={Jolien M. {Kamphuis} and Desmond {Kabus} and Sylvestre {Bonnet} and Hermen Jan {Hupkes} and Tim {De Coster}},
  title={Microscopic variability alters macroscopic rotation speed in stochastic spiral waves},
  year={2026},
  note={In preparation},
}

@article{leenknegt2026egm,
  author={Lore {Leenknegt} and Sharif {Omara} and Marie {Cloet} and Desmond {Kabus} and Katja {Zeppenfeld} and Alexander V. {Panfilov} and Hans {Dierckx}},
  title={The {EGM} generated by an oblique wave front and its application in solving the inverse problem},
  year={2026},
  note={In preparation},
}

@thesis{kabus2016comparison,
  url={https://hbz-ubo.primo.exlibrisgroup.com/permalink/49HBZ_UBO/mnkbqv/alma991012283309706471},
  location={Bochum, Germany},
  title={Comparison of phase field and interpolation methods for the representation of geometries in the numerical analysis of reaction-diffusion systems},
  institution={Ruhr-Universität Bochum},
  type={Bachelor's thesis},
  author={Kabus, Desmond},
  date={2016},
  langid={english}
}

@thesis{kabus2019analysis,
  url={https://hbz-ubo.primo.exlibrisgroup.com/permalink/49HBZ_UBO/mnkbqv/alma991018264849706471},
  location={Bochum, Germany},
  title={Analysis of parametric level set functions for the representation of geometry in the optimal control of reaction-diffusion systems},
  institution={Ruhr-Universität Bochum},
  type={Master's thesis},
  author={Kabus, Desmond},
  date={2019},
  langid={english}
}
# https://research.kuleuven.be/portal/en/project/3E201056

@thesis{kabus2025towards,
  url={https://dkabus.gitlab.io/thesis-phd},
  location={Leuven, Belgium and Leiden, The Netherlands},
  title={Towards data-driven generation of individualised human heart models from scalable heart muscle sheets},
  institution={KU Leuven and Leiden University Medical Center},
  type={PhD thesis},
  author={Kabus, Desmond},
  date={2025},
  langid={english}
}

@inproceedings{kabus2022ehra,
  url={https://esc365.escardio.org/presentation/247532},
  author={{Kabus}, Desmond and {Arno}, Louise and {Leenknegt}, Lore and {Harlaar}, Niels and {Dekker}, Sven O. and {Panfilov}, Alexander V. and {De Vries}, Antoine A.F. and {Pijnappels}, Daniël A. and {Dierckx}, Hans},
  title={Centres of spiral waves can be detected as phase defect lines in optical voltage mapping data and numerical simulations},
  booktitle={Conference of the European Heart Rhythm Association (EHRA)},
  year={2022},
  address={Copenhagen, Denmark},
  note={abstract and poster presentation},
}

@inproceedings{kabus2023siamds,
  url={https://meetings.siam.org/sess/dsp_talk.cfm?p=127148},
  author={{Kabus}, Desmond and {Harlaar}, Niels and {Dekker}, Sven O. and {de Vries}, Antoine A.F. and {Pijnappels}, Daniël A. and {Dierckx}, Hans},
  title={Creation of predictive cardiac excitation models at the tissue scale with machine learning in augmented state space},
  booktitle={SIAM Conference on Applications of Dynamical Systems (DS23)},
  year={2023},
  number={MS121},
  address={Portland, Oregon, United States},
  note={abstract and talk},
}

% https://websites.auth.gr/ddeu2025/poster-presentations/
@inproceedings{kabus2025ddeu,
  url={https://websites.auth.gr/ddeu2025/wp-content/uploads/sites/321/2025/06/Kabus.pdf},
  author={{Kabus}, Desmond and {De Coster}, Tim},
  title={Pigreads enables rapid scientific prototyping through integration into the {Python} ecosystem},
  booktitle={Dynamics Days Europe 2025},
  year={2025},
  number={P21},
  address={Thessaloniki, Greece},
  note={abstract and poster presentation},
}

@inproceedings{kabus2025waves,
  url={https://conference25.waves.kit.edu/wp-content/uploads/2025/02/BoA.pdf},
  author={{Kabus}, Desmond and {Dierckx}, Hans and {De Coster}, Tim},
  title={Accelerated simulation of cardiac tissue using data-driven models},
  booktitle={Conference on Mathematics of Wave Phenomena 2025},
  year={2025},
  number={MS05},
  address={Karlsruhe, Germany},
  note={abstract and talk},
}